Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.

Journal: Cell
Published:
Abstract

Most loci identified by GWASs have been found in populations of European ancestry (EUR). In trans-ethnic meta-analyses for 15 hematological traits in 746,667 participants, including 184,535 non-EUR individuals, we identified 5,552 trait-variant associations at p < 5 × 10-9, including 71 novel associations not found in EUR populations. We also identified 28 additional novel variants in ancestry-specific, non-EUR meta-analyses, including an IL7 missense variant in South Asians associated with lymphocyte count in vivo and IL-7 secretion levels in vitro. Fine-mapping prioritized variants annotated as functional and generated 95% credible sets that were 30% smaller when using the trans-ethnic as opposed to the EUR-only results. We explored the clinical significance and predictive value of trans-ethnic variants in multiple populations and compared genetic architecture and the effect of natural selection on these blood phenotypes between populations. Altogether, our results for hematological traits highlight the value of a more global representation of populations in genetic studies.

Authors
Ming-huei Chen, Laura Raffield, Abdou Mousas, Saori Sakaue, Jennifer Huffman, Arden Moscati, Bhavi Trivedi, Tao Jiang, Parsa Akbari, Dragana Vuckovic, Erik Bao, Xue Zhong, Regina Manansala, Véronique Laplante, Minhui Chen, Ken Lo, Huijun Qian, Caleb Lareau, Mélissa Beaudoin, Karen Hunt, Masato Akiyama, Traci Bartz, Yoav Ben Shlomo, Andrew Beswick, Jette Bork Jensen, Erwin Bottinger, Jennifer Brody, Frank J Van Rooij, Kumaraswamynaidu Chitrala, Kelly Cho, Hélène Choquet, Adolfo Correa, John Danesh, Emanuele Di Angelantonio, Niki Dimou, Jingzhong Ding, Paul Elliott, Tõnu Esko, Michele Evans, James Floyd, Linda Broer, Niels Grarup, Michael Guo, Andreas Greinacher, Jeff Haessler, Torben Hansen, Joanna Howson, Qin Huang, Wei Huang, Eric Jorgenson, Tim Kacprowski, Mika Kähönen, Yoichiro Kamatani, Masahiro Kanai, Savita Karthikeyan, Fotis Koskeridis, Leslie Lange, Terho Lehtimäki, Markus Lerch, Allan Linneberg, Yongmei Liu, Leo-pekka Lyytikäinen, Ani Manichaikul, Hilary Martin, Koichi Matsuda, Karen Mohlke, Nina Mononen, Yoshinori Murakami, Girish Nadkarni, Matthias Nauck, Kjell Nikus, Willem Ouwehand, Nathan Pankratz, Oluf Pedersen, Michael Preuss, Bruce Psaty, Olli Raitakari, David Roberts, Stephen Rich, Benjamin A Rodriguez, Jonathan Rosen, Jerome Rotter, Petra Schubert, Cassandra Spracklen, Praveen Surendran, Hua Tang, Jean-claude Tardif, Richard Trembath, Mohsen Ghanbari, Uwe Völker, Henry Völzke, Nicholas Watkins, Alan Zonderman, Yun Li, Adam Butterworth, Jean-françois Gauchat, Charleston W Chiang, Bingshan Li, Ruth J Loos, William Astle, Evangelos Evangelou, David Van Heel, Vijay Sankaran, Yukinori Okada, Nicole Soranzo, Andrew Johnson, Alexander Reiner, Paul Auer, Guillaume Lettre