Combining Asian-European Genome-Wide Association Studies of Colorectal Cancer Improves Risk Prediction Across Race and Ethnicity.

Journal: MedRxiv : The Preprint Server For Health Sciences
Published:
Abstract

Polygenic risk scores (PRS) have great potential to guide precision colorectal cancer (CRC) prevention by identifying those at higher risk to undertake targeted screening. However, current PRS using European ancestry data have sub-optimal performance in non-European ancestry populations, limiting their utility among these populations. Towards addressing this deficiency, we expanded PRS development for CRC by incorporating Asian ancestry data (21,731 cases; 47,444 controls) into European ancestry training datasets (78,473 cases; 107,143 controls). The AUC estimates (95% CI) of PRS were 0.63(0.62-0.64), 0.59(0.57-0.61), 0.62(0.60-0.63), and 0.65(0.63-0.66) in independent datasets including 1,681-3,651 cases and 8,696-115,105 controls of Asian, Black/African American, Latinx/Hispanic, and non-Hispanic White, respectively. They were significantly better than the European-centric PRS in all four major US racial and ethnic groups (p-values<0.05). Further inclusion of non-European ancestry populations, especially Black/African American and Latinx/Hispanic, is needed to improve the risk prediction and enhance equity in applying PRS in clinical practice.

Authors
Minta Thomas, Yu-ru Su, Elisabeth Rosenthal, Lori Sakoda, Stephanie Schmit, Maria Timofeeva, Zhishan Chen, Ceres Fernandez Rozadilla, Philip Law, Neil Murphy, Robert Carreras Torres, Virginia Diez Obrero, Franzel Van Duijnhoven, Shangqing Jiang, Aesun Shin, Alicja Wolk, Amanda Phipps, Andrea Burnett Hartman, Andrea Gsur, Andrew Chan, Ann Zauber, Anna Wu, Annika Lindblom, Caroline Um, Catherine Tangen, Chris Gignoux, Christina Newton, Christopher Haiman, Conghui Qu, D Bishop, Daniel Buchanan, David Crosslin, David Conti, Dong-hyun Kim, Elizabeth Hauser, Emily White, Erin Siegel, Fredrick Schumacher, Gad Rennert, Graham Giles, Heather Hampel, Hermann Brenner, Isao Oze, Jae Oh, Jeffrey Lee, Jennifer Schneider, Jenny Chang Claude, Jeongseon Kim, Jeroen Huyghe, Jiayin Zheng, Jochen Hampe, Joel Greenson, John Hopper, Julie Palmer, Kala Visvanathan, Keitaro Matsuo, Koichi Matsuda, Keum Jung, Li Li, Loic Marchand, Ludmila Vodickova, Luis Bujanda, Marc Gunter, Marco Matejcic, Mark Jenkins, Martha Slattery, Mauro D'amato, Meilin Wang, Michael Hoffmeister, Michael Woods, Michelle Kim, Mingyang Song, Motoki Iwasaki, Mulong Du, Natalia Udaltsova, Norie Sawada, Pavel Vodicka, Peter Campbell, Polly Newcomb, Qiuyin Cai, Rachel Pearlman, Rish Pai, Robert Schoen, Robert Steinfelder, Robert Haile, Rosita Vandenputtelaar, Ross Prentice, Sébastien Küry, Sergi Castellví Bel, Shoichiro Tsugane, Sonja Berndt, Soo Lee, Stefanie Brezina, Stephanie Weinstein, Stephen Chanock, Sun Jee, Sun-seog Kweon, Susan Vadaparampil, Tabitha Harrison, Taiki Yamaji, Temitope Keku, Veronika Vymetalkova, Volker Arndt, Wei-hua Jia, Xiao-ou Shu, Yi Lin, Yoon-ok Ahn, Zsofia Stadler, Bethany Van Guelpen, Cornelia Ulrich, Elizabeth Platz, John Potter, Christopher Li, Reinier Meester, Victor Moreno, Jane Figueiredo, Graham Casey, Iris Vogelaar, Malcolm Dunlop, Stephen Gruber, Richard Hayes, Paul D Pharoah, Richard Houlston, Gail Jarvik, Ian Tomlinson, Wei Zheng, Douglas Corley, Ulrike Peters, Li Hsu
Relevant Conditions

Colorectal Cancer