Collaborative large language models for automated data extraction in living systematic reviews.

Journal: Journal Of The American Medical Informatics Association : JAMIA
Published:
Abstract

Objective: Data extraction from the published literature is the most laborious step in conducting living systematic reviews (LSRs). We aim to build a generalizable, automated data extraction workflow leveraging large language models (LLMs) that mimics the real-world 2-reviewer process.

Methods: A dataset of 10 trials (22 publications) from a published LSR was used, focusing on 23 variables related to trial, population, and outcomes data. The dataset was split into prompt development (n = 5) and held-out test sets (n = 17). GPT-4-turbo and Claude-3-Opus were used for data extraction. Responses from the 2 LLMs were considered concordant if they were the same for a given variable. The discordant responses from each LLM were provided to the other LLM for cross-critique. Accuracy, ie, the total number of correct responses divided by the total number of responses, was computed to assess performance.

Results: In the prompt development set, 110 (96%) responses were concordant, achieving an accuracy of 0.99 against the gold standard. In the test set, 342 (87%) responses were concordant. The accuracy of the concordant responses was 0.94. The accuracy of the discordant responses was 0.41 for GPT-4-turbo and 0.50 for Claude-3-Opus. Of the 49 discordant responses, 25 (51%) became concordant after cross-critique, increasing accuracy to 0.76.

Conclusions: Concordant responses by the LLMs are likely to be accurate. In instances of discordant responses, cross-critique can further increase the accuracy. Conclusions: Large language models, when simulated in a collaborative, 2-reviewer workflow, can extract data with reasonable performance, enabling truly "living" systematic reviews.

Authors
Muhammad Khan, Umair Ayub, Syed Arsalan Naqvi, Kaneez Zahra Khakwani, Zaryab Bin Sipra, Ammad Raina, Sihan Zhou, Huan He, Amir Saeidi, Bashar Hasan, Robert Rumble, Danielle Bitterman, Jeremy Warner, Jia Zou, Amye Tevaarwerk, Konstantinos Leventakos, Kenneth Kehl, Jeanne Palmer, Mohammad Murad, Chitta Baral, Irbaz Riaz